# research
Research
My research uses systems biology and clinomics to get closer to better diagnosis and treatment. The current focus is Neurofibromatosis Type 1 (NF1) and its associated cancers: turning single-cell and multi-omics data from tumor models into insights that are useful in the clinic.
You can find the tools I have built on the work page, and more on my current NF1 work on the NF1 page.
## publications
Siddharth Yadav, Samuel Bharti, Puniti Mathur (2023). GlucoKinaseDB: A comprehensive, curated resource of glucokinase modulators for clinical and molecular research. Computational Biology and Chemistry
Samuel Bharti, Nikita Krishnan, Arian Veyssi, Maryam Momeni, Sneha Raj (2022). sMAP: An interactive microarray data analysis tool for early-stage researchers. bioRxiv
Zongliang Yue, Radomir Slominski, Samuel Bharti and Jake Y Chen (2022). PAGER Web APP: An Interactive, Online Gene Set and Network Interpretation Tool for Functional Genomics. Frontiers in Genetics
Siddharth Yadav, Samuel Bharti, Priyansh Srivastava & Puniti Mathur (2022). PepEngine: A Manually Curated Structural Database of Peptides Containing α, β- Dehydrophenylalanine (ΔPhe) and α-Amino Isobutyric Acid (Aib). International Journal of Peptide Research and Therapeutics.
Nguyen, T. M., Bharti, S., Yue, Z., Willey, C. D., & Chen, J. Y. (2021). Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples. Frontiers in Big Data, 4, 725276.
Nguyen, T. M., Bharti, S., Yue, Z., Willey, C. D., & Chen, J. Y. (2021). Corrigendum: Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples. Frontiers in Big Data, 4, 804141.
Srivastava, P., Talwar, M., Yadav, A., Choudhary, A., Mohanty, S., Bharti, S., Narad, P., & Sengupta, A. (2021). VIRdb 2.0: Interactive analysis of comorbidity conditions associated with vitiligo pathogenesis using co-expression network-based approach. F1000Research, 9, 1055.
Bharti, S., Sengupta, A., Chugh, P., & Narad, P. (2020). PluriMetNet: A dynamic electronic model decrypting the metabolic variations in human embryonic stem cells (hESCs) at fluctuating oxygen concentrations. Journal of Biomolecular Structure and Dynamics, 1-9.
Bharti, S., Narad, P., Chugh, P., Choudhury, A., Bhatnagar, S., & Sengupta, A. (2020). Multi-parametric disease dynamics study and analysis of the COVID-19 epidemic and implementation of population-wide intrusions: The Indian perspective. MedRxiv, 2020.06.02.20120360.
## presentations
- poster
Application of a Multi-Omics Approach in NF1-Deficient Tumors and Controls can Highlight Novel Associations and Therapeutic Targets.
CCTS Translational Training Symposium, Biloxi, MS (Sep 2023).
- poster
Exploratory Analysis of Cancer Clinical Samples using the new Web-based SEAS Software.
O'Neal Research Retreat, UAB (Oct 2022).
- poster
Exploratory Analysis of Cancer Clinical Samples using the new Web-based SEAS Software.
CCTS Translational Training Symposium, Mobile, AL (Sep 2022).
- poster
PluriMetNet: A dynamic electronic model deciphering the metabolic profiling of human embryonic stem cells (hESCs) and its applications.
RECOMB 2020, Italy (Jun 2020).