Turn a STRING network response into an edge table

Pure. Edge endpoints come back in STRING's preferredName space; see string_reconcile_edges() for why that matters.

Usage

string_parse_network(body)

Arguments

body

A parsed STRING network response, a JSON array of edges.

Value

A tibble of gene_a, gene_b, and score, upper-cased. A zero-row tibble when there are no edges, because "no high-confidence edges" is a real answer about a set rather than an absence of one.

Examples

body <- list(list(
  preferredName_A = "TP53", preferredName_B = "NF1", score = 0.88
))
string_parse_network(body)
#> # A tibble: 1 × 3
#>   gene_a gene_b score
#>   <chr>  <chr>  <dbl>
#> 1 TP53   NF1     0.88