Usage
myvariant_parse_record(record)
Arguments
- record
A parsed MyVariant record.
Value
A one-row tibble of gene, revel, cadd, clinpred,
alphamissense, and clinvar_sig.
CADD's key is not what you would guess
Every other dbNSFP predictor exposes <name>.rankscore. CADD does not: it is
cadd.raw_rankscore, and there is no plain cadd.rankscore. Following the
pattern gives NA for CADD on every variant with nothing to indicate it.
Examples
record <- list(dbnsfp = list(
genename = list("TP53"),
cadd = list(raw_rankscore = 0.17018),
revel = list(rankscore = 0.4)
))
myvariant_parse_record(record)
#> # A tibble: 1 × 6
#> gene revel cadd clinpred alphamissense clinvar_sig
#> <chr> <dbl> <dbl> <dbl> <dbl> <chr>
#> 1 TP53 0.4 0.170 NA NA NA
