Turn Monarch association records into a table — monarch_parse

Pure.

Usage

monarch_parse_associations(body)

Arguments

body: A parsed Monarch association response, or the items list from one.

Value

A tibble of subject, subject_label, subject_category, predicate, object, object_label, object_category, primary_knowledge_source, knowledge_level, and publications. NULL when there are no associations.

Details

One row per association, exactly as Monarch sent it. Nothing is dropped and nothing is merged. publications is a list column because an association carries any number of them, and null and an array both occur.

Examples

body <- list(items = list(list(
  subject = "MONDO:0017309",
  subject_label = "neonatal Marfan syndrome",
  predicate = "biolink:has_phenotype",
  object = "HP:0001653",
  object_label = "Mitral regurgitation",
  publications = NULL
)))
monarch_parse_associations(body)
#> # A tibble: 1 × 10
#>   subject       subject_label     subject_category predicate object object_label
#>   <chr>         <chr>             <chr>            <chr>     <chr>  <chr>       
#> 1 MONDO:0017309 neonatal Marfan … NA               biolink:… HP:00… Mitral regu…
#> # ℹ 4 more variables: object_category <chr>, primary_knowledge_source <chr>,
#> #   knowledge_level <chr>, publications <list>