Turn an HPA gene record into a table — hpa_parse

Pure.

Usage

hpa_parse_gene(body, ensembl = NA_character_)

Arguments

body: A parsed HPA gene record.
ensembl: The Ensembl gene id that was queried.

Value

A one-row tibble of symbol, ensembl, uniprot, protein_class, disease_involvement, and source_url. NULL when the record is empty.

Details

protein_class and disease_involvement are list columns, because a gene carries any number of tags and flattening them to one string would make them unusable without re-splitting.

Examples

body <- list(
  Gene = "TP53",
  Ensembl = "ENSG00000141510",
  Uniprot = list("P04637"),
  `Protein class` = list("Cancer-related genes", "Transcription factors"),
  `Disease involvement` = list("Tumor suppressor")
)
hpa_parse_gene(body, "ENSG00000141510")
#> # A tibble: 1 × 6
#>   symbol ensembl         uniprot   protein_class disease_involvement source_url 
#>   <chr>  <chr>           <list>    <list>        <list>              <chr>      
#> 1 TP53   ENSG00000141510 <chr [1]> <chr [2]>     <chr [1]>           https://ww…