Turn a GTEx median-expression response into a table — gtex_parse

Pure. Tissue ids arrive underscore-separated (Adipose_Subcutaneous) and are returned both raw and as a readable label.

Usage

gtex_parse_expression(body)

Arguments

body: A parsed GTEx expression/medianGeneExpression response.

Value

A tibble of tissue_id, tissue, median_tpm, and gencode_id. Rows with no median are dropped. NULL when there is nothing usable.

Examples

body <- list(data = list(list(
  median = 22.459, tissueSiteDetailId = "Adipose_Subcutaneous",
  gencodeId = "ENSG00000141510.16", unit = "TPM"
)))
gtex_parse_expression(body)
#> # A tibble: 1 × 4
#>   tissue_id            tissue               median_tpm gencode_id        
#>   <chr>                <chr>                     <dbl> <chr>             
#> 1 Adipose_Subcutaneous Adipose Subcutaneous       22.5 ENSG00000141510.16