Pure. Sums the exome and genome sample sets per ancestry group.
Usage
gnomad_parse_populations(exome_pops, genome_pops)
Arguments
- exome_pops, genome_pops
The populations lists from each sample set.
Value
A tibble of pop, label, ac, an, af, sorted by frequency
descending. NULL when there is nothing to report.
Details
Sex-split ids such as nfe_XX and the bare XX/XY breakdowns are dropped,
by keeping only the known ancestry codes, so the result is one row per
ancestry rather than a mix of ancestries and sexes.
Examples
gnomad_parse_populations(
list(list(id = "nfe", ac = 3, an = 1000)),
list(list(id = "nfe", ac = 1, an = 500))
)
#> # A tibble: 1 × 5
#> pop label ac an af
#> <chr> <chr> <dbl> <dbl> <dbl>
#> 1 nfe European (non-Finnish) 4 1500 0.00267
