Pure. For colouring and grouping, where the full free-text significance is
too granular to plot.
Usage
clinvar_category(significance)
Arguments
- significance
A ClinVar clinical significance string.
Value
One of "Conflicting", "Pathogenic / likely",
"Benign / likely", "Uncertain", or "Other".
Details
The order of the checks matters. A conflicting record usually contains the
word "pathogenic" too, so conflicting has to be tested first or every
conflicting record reads as pathogenic.
Examples
clinvar_category("Pathogenic")
#> [1] "Pathogenic / likely"
clinvar_category("Conflicting interpretations of pathogenicity")
#> [1] "Conflicting"
