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Parse the ClinGen gene-validity CSV

Source: R/clingen_validity.R
clingen_parse_validity.Rd

Pure. Takes the file as a single string, the way biohttp::get_text() returns it.

Usage

clingen_parse_validity(text)

Arguments

text

The CSV file contents.

Value

A tibble of gene, hgnc, disease, mondo, moi, classification, sop, panel, date, and source_url, one row per curation. A gene appears once per disease it has been curated against. NULL when the file is empty or carries no header.

Examples

text <- paste(
  '"CLINGEN GENE DISEASE VALIDITY CURATIONS","",""',
  '"+++","+++","+++"',
  '"GENE SYMBOL","DISEASE LABEL","CLASSIFICATION"',
  '"+++","+++","+++"',
  '"NF1","neurofibromatosis type 1","Definitive"',
  sep = "\n"
)
clingen_parse_validity(text)
#> # A tibble: 1 × 10
#>   gene  hgnc  disease    mondo moi   classification sop   panel date  source_url
#>   <chr> <chr> <chr>      <chr> <chr> <chr>          <chr> <chr> <chr> <chr>     
#> 1 NF1   NA    neurofibr… NA    NA    Definitive     NA    NA    NA    NA