Turn one Allele Registry element into a table row

Pure.

Usage

clingen_parse_allele(element)

Arguments

element

One parsed Allele Registry element.

Value

A one-row tibble.

An unresolved input is a row, not a gap

ClinGen answers an input it could not resolve with an object carrying no @id, and an errorType/message instead. That becomes a row with resolved = FALSE and the reason, rather than being dropped. Dropping it would shift every later row onto the wrong variant, and would lose the reason the input was rejected.

Examples

clingen_parse_allele(list(errorType = "IncorrectHgvsPosition"))
#> # A tibble: 1 × 12
#>   resolved caid  reason             rsid  clinvar_allele_id clinvar_variation_id
#>   <lgl>    <chr> <chr>              <chr>             <int>                <int>
#> 1 FALSE    NA    IncorrectHgvsPosi… NA                   NA                   NA
#> # ℹ 6 more variables: myvariant_hg38 <chr>, chrom <chr>, pos <int>, ref <chr>,
#> #   alt <chr>, title <chr>