The predicted structure for a UniProt accession — alphafold

Metadata only. No coordinates are downloaded; use pdb_url from the result for that, and only when something is actually going to render it.

Usage

alphafold_model(accession, ...)

Arguments

accession: A UniProt accession, for example "P15056".
...: Passed to biohttp::get_json(), for example throttle.

Value

A biohttp envelope whose data is a one-row tibble. See alphafold_parse_model().

References

Varadi et al. (2024). AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences. Nucleic Acids Research 52(D1), D368-D375. doi:10.1093/nar/gkad1011

Service documentation: https://alphafold.ebi.ac.uk/

Examples

# \donttest{
biohttp::body_or_null(alphafold_model("P15056"))
#> # A tibble: 1 × 6
#>   accession pdb_url                        cif_url version mean_plddt source_url
#>   <chr>     <chr>                          <chr>     <dbl>      <dbl> <chr>     
#> 1 P15056    https://alphafold.ebi.ac.uk/f… https:…       6       66.4 https://a…
# }