# biobouncer

> A gate for biological inputs. It validates gene symbols, ontology terms,
> variant formats, and database identifiers across 50 sources, and returns
> the same verdict in Python and R. Version 0.1.4.

## Documentation

- [Full context for LLMs](https://www.samuelbharti.com/biobouncer/llms-full.txt): the whole API and usage in one file.
- [Overview](https://www.samuelbharti.com/biobouncer/): what biobouncer is, with install and a first example.
- [Python documentation](https://www.samuelbharti.com/biobouncer/py/): guide, column cleaning, examples, CLI, and API reference.
- [R documentation](https://www.samuelbharti.com/biobouncer/r/): reference and vignettes.

## Use it

- [Install for Python](https://pypi.org/project/biobouncer/): `pip install biobouncer`.
- [Install for R](https://samuelbharti.r-universe.dev): `install.packages("biobouncer", repos = "https://samuelbharti.r-universe.dev")`.
- [Demo notebooks](https://github.com/samuelbharti/biobouncer/tree/main/demo): the same story in Python and R over messy data.

## Source

- [Repository](https://github.com/samuelbharti/biobouncer): source code, issues, and the shared cross-language spec.